Publications P02 NELLEN / HAMMANN

2008

Renata Z. Jurkowska, Sergei Ragozine, Nils Ansbach, Claus Urbanke, Wolfgang Nellen, Xiaodong Cheng, Albert Jeltsch, Structure and function of Dnmt3a and Dnmt3/3L nucleoprotein filaments (submitted)

Martin Převorovský, Tomáš Groušl, Jana Staňurová, Jan Ryneš,Wolfgang Nellen, František Půta, Petr Folk: CBF1 homologs operate in fission yeast (submitted)

Hui Li1, Qian Chen, Markus Kaller, Wolfgang Nellen, Ralph Graf & Arturo De Lozanne: Dictyostelium Aurora kinase has properties of both Aurora A and Aurora B kinases. (submitted).

2007

M. Kaller, B. Földesi & W. Nellen (2007): Mitotic localisation of protein factors involved in chromosome inheritance in  Dictyostelium discoideum. Biological Chemistry, 388, 355-365. (Title page)

T. P. Jurkowski, N. Anspach, L. Kulishova, W. Nellen & A. Jeltsch (2007): The M.EcoRV DNA-(adenine N6)-methyltransferase uses direct readout and indirect readout for DNA recognition. J. Biol. Chem. 282, 36942-52.

A. Hinas, J. Reimegard, E.G.H. Wagner, W. Nellen, V. Ambros  F. Söderbom (2007): The small RNA repertoire of Dictyostelium discoideum and its regulation by components of the RNAi pathway. Nucleic Acids Res. 35, 6714-26.

2006

A. Jeltsch, W. Nellen & F. Lyko (2006): Two substrates are better than one: dual specificities for Dnmt2 methyltransferases. Trends Biochem Sci, 31, 306-308.

M. Kaller, U. Euteneuer & W. Nellen (2006): Non-redundant HP1-like proteins in Dictyostelium discoideum: different functions during vegetative growth. Eukaryotic Cell 5, 530-543

M. Kaller, W. Nellen & J. R. Chubb (2006): Chromatin Analysis and Epigenetics. In: Dictyostelium discoideum protocols. Methods in Molecular Biology. Edts.: L. Eichinger and F. Rivera. Humana Press ISBN 1-59745-144-4

J. R. Chubb, G. Bloomfield, Q. Xu, M. Kaller, A. Ivens, J. Skeöton, B. Turner, W. Nellen, G. Shaulsky, R. R. Kay, W. A. Bickmore, R. H. Singer (2006): Developmental Timing in Dictyostelium is Regulated by the Set1 Histone Methyltransferase. Dev. Biol., 292, 519-532.

B. Popova, M. Kuhlmann, A. Hinas, F. Söderbom & W. Nellen (2006): HelF, a putative RNA helicase acts as a nuclear suppressor of RNAi but not antisense mediated gene silencing. Nucleic Acids Res., 34, 773-784

M. Kuhlmann, B. Popova & W. Nellen (2006): RNA interference and antisense mediated gene silencing in Dictyostelium. In: Dictyostelium discoideum protocols. Methods in Molecular Biology. Edts.: L. Eichinger and F. Rivera. Humana Press ISBN 1-59745-144-4

2005

M. Kuhlmann, B. E. Borisova, M. Kaller, P. Larsson, D. Stach, J. Na, L. Eichinger, F. Lyko, V. Ambros, F. Söderbom, C. Hammann and W. Nellen (2005): Silencing of retrotransposons in Dictyostelium by DNA methylation and RNAi. Nucleic Acids Res. 33, 6405–641

R. Przybilski, S. Gräf, A. Lescoute-Phillips, E. Westhof, W. Nellen, G. Steger, C. Hammann (2005): Hammerhead ribozymes encoded in the genome of A. thaliana. Plant Cell 17, 1877-1885

Gräf S, Przybilski R, Steger G & Hammann C (2005). A database search for hammerhead ribozyme motifs. Biochemical Society Transactions, 33, 477-478

M. Kuhlmann, B. Popova & W. Nellen (2005): RNA interference and antisense mediated gene silencing. In: Small RNAs: Analysis and Regulatory Functions. Series “Nucleic Acids and Molecular Biology”, Vol. 17, Edts.: W. Nellen and C. Hammann, Springer, pp 142-158, ISBN: 3-540-28129-0

Hammann C (2005). Protein Interactions with Double Stranded RNA in Eukaryotic Cells. In: Small RNAs: analysis and regulatory functions, Nellen W and Hammann C, eds, Nucleic Acids and Molecular Biology, Vol. 17, (Berlin: Springer Verlag), 91-118

2004

T. Brodegger, A. Stockmann, J. Oberstraß, W. Nellen, and H. Follmann (2004): Novel thioredoxin targets in Dictyostelium discoideum identified by two-hybrid analysis. Interactions of thioredoxin with elongation factor 1α and yeast alcohol dehydrogenase. Biological Chemistry, 385, 1185-1192

S. Gräf, B. E. Borisova, W. Nellen, G. Steger & C. Hammann (2004): A database search for double-strand containing RNAs in Dictyostelium discoideum. Biological Chemistry 385, 961-965

W. Nellen (2004): Scanning Force Microscopy and Scanning Force Spectroscopy of RNA. In: Handbook of Biochemistry, Wiley Publishers, Roland Hartmann , Albrecht Bindereif , Astrid Schön , Eric Westhof (Edts.), ISBN: 3-527-30826-1

2003

Y. Klaue, A. Källmann, M. Bonin, W. Nellen & M. Öhman (2003): Biochemical analysis and scanning force microscopy reveal productive and non-productive binding of ADAR2 to RNA substrates. RNA 9, 839-846

S. Funamoto, C. Anjard, W. Nellen & H. Ochiai (2003): cAMP dependent protein kinase regulates Polyspondylium pallidum development. Differentiation 71, 51-61

W. Nellen & M. Maniak (2003): Dictyostelium: Cell Culture and Molecular tools. In: Nature Encyclopedia of Life Sciences. London: Nature Publishing Group

Hammann C (2003). RNA for everyone! ChemBioChem, 4, 1103

C. Hammann & W. Nellen (2003): The tmRNA Website (Rezension) Angewandt Chemie 115, 503, 42, 503

2002

H. Martens, J. Novotny, J. Oberstrass, T.L. Steck, P. Postlethwait & W. Nellen (2002): RNAi in Dictyostelium: the role of RdRPs and dsRNase. Mol. Biol. Cell, 13, 445-453

M. Bonin, R. Zhu, Y. Klaue, J. Oberstrass & W. Nellen (2002): Analysis of RNA-RNA interaction by scanning force microscopy. Nucleic Acids Res. 30, (16):e81.

Hammann C & Lilley DMJ (2002). Folding and activity of the hammerhead ribozyme. ChemBioChem, 3, 690-700

2001

Hammann C, Norman DG & Lilley DMJ (2001). Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR. Proceedings of the National Academy of Science U S A. 98, 5503-5508

Novotny, J., Diegel, S., Schirmacher, H., Mohrle, A., Hildebrandt, M., Oberstrass, J. & Nellen, W. (2001): Dictyostelium double-stranded ribonuclease. Methods Enzymol. 342, 193-212.

Hammann, C., Cooper, A., Lilley, D.M. (2001): Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: an isothermal titration calorimetric study. Biochemistry 40, 1423-1429.

M. Bonin, J. Oberstrass, U. Vogt, M. Wassenegger & W. Nellen (2001): Binding of IRE-BP to its cognate RNA sequence: SFM studies on a universal backbone for the analysis of RNA-protein interactions. Biol. Chem. 382, 1157-1162

Hammann C (2001). Die Faltung einer kleinen katalytischen RNA. BIOspektrum 6/01, 558